PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G20780.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 387aa    MW: 39620.8 Da    PI: 7.77
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G20780.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.5e-18278313136
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                      C++C + kTp+WR gp g+ktLCnaCG+++++ +l+
  ONIVA10G20780.1 278 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 313
                      ********************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    
MASEWEMAMG VDLGMGMSTY HNASGGIAAA PMMGHHGGGG GGGGYSAAHH HHHHYYGMPH  60
QAAMGDAMRV DDLLDLSNTP GAHDFFPASA AAAAAGDHGH HHHHHIGGMG EPSGATPSAT  120
SSDHQTSMLS FADDFYIPTE DAAELEWLSK FVDDSYSDMP NYQSSAHAAM AAAAASAANN  180
GGGSSAGQDS CLTAAPGRGA RSKRSRATAA AAAAWHSLVP RPPSQSSPSS SCSSSDFPSS  240
NKPSGTARPN GSGGGSRGKK SPGPAGAEVG MEAGVRRCTH CASEKTPQWR TGPLGPKTLC  300
NACGVRFKSG RLMPEYRPAA SPTFVLTQHS NSHRKVMELR RQKELLIIRG SHRDAAAAAA  360
AAAAAAAAGS AAATGRPELM FRDYGVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-45GATA family protein