PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G00470.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 141aa MW: 15545.9 Da PI: 11.9728

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G00470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	94.3	2.5e-29	15	127	2	116
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesss 79 agkkd+hsk+ T++g+RdR vRls++ a+ f+d+qd+LG+d++sk ieWL+++a +ai++ ++ ++ ONIVA11G00470.1 15 AGKKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKSIEWLIRAAAAAIDAFLSLdcslvlpnaaqlltrwR-----------RR 97 79**************************************************************66555433333333331...........22 PP TCP 80 ssasnsssgkaaksaakskksqksaasalnlakesra 116 s++++s+++a++ +a+ s ++ e+r ONIVA11G00470.1 98 PSSGQPSEEQARTRKATVAVS-------PRKSGEKRR 127 222222222111111111111.......111112222 PP

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence
MAAAWRTSQV ARVVAGKKDK HSKVVTSRGL RDRCVRLSVP MAIAFYDIQD RLGVDQPSKS 60 IEWLIRAAAA AIDAFLSLDC SLVLPNAAQL LTRWRRRPSS GQPSEEQART RKATVAVSPR 120 KSGEKRRKTR SGCAVRSASR S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	1e-22	TCP family protein

Link Out ? help Back to Top
Ensembl	ONIVA11G00470.1