PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G04610.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 468aa MW: 48160.5 Da PI: 8.5767

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G04610.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	156.9	1.2e-48	146	302	2	137
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 ag+k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s+as+sss++aa+++ ONIVA11G04610.1 146 AGAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAASHSSSPRAAPFH 239 789****************************************************************9999***************** PP TCP 95 akskksqksaasalnlakesr....................akarararertrekmriknkln 137 + ++++q++ a++l ++++++ a + +r+r+r++++ +++++++ ONIVA11G04610.1 240 HLQQQQQHDVAAMLGFHHHHHqllppppphqhpeptpqdpgAGEFMRKRYREADDLFKDTSRQ 302 **************9999******************************999998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MIKDLRTLES WAKEKPEIEQ PALQAVVGGG GLRAAAAAAE GGMEQQAAPS SSTSTSTNSS 60 RSTSDHHAAA AAAAAAAAAQ VAHQHHPFYY AAAQGGANTM PAPASFMGSL AIVPAAAAPG 120 GGGGQVQAAA APVASSEKKA VVAAGAGAKR PTKDRHTKVE GRGRRIRMPA LCAARVFQLT 180 RELGHKTDGE TIEWLLQQAE PAIVAATGTG TIPANFSSLA VSLRSAASHS SSPRAAPFHH 240 LQQQQQHDVA AMLGFHHHHH QLLPPPPPHQ HPEPTPQDPG AGEFMRKRYR EADDLFKDTS 300 RQDPVDGATG EAEQKARAAA AAAAPPPTAP SAMWAVGPNT TGATAAFWMQ PAWAFPHGAG 360 AGAAGNTVQA PLQFMSRSSF PTAMNVTMAD NNNSSNNNLG MLAALNAGGG GRSGEHQHQH 420 EGQSPAEMDH QRRANGGGGE AGGAASSQFR MIINQFAIVR GFTSPESI

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MIKDLRTLES WAKEKPEIEQ PALQAVVGGG GLRAAAAAAE GGMEQQAAPS SSTSTSTNSS  60
RSTSDHHAAA AAAAAAAAAQ VAHQHHPFYY AAAQGGANTM PAPASFMGSL AIVPAAAAPG  120
GGGGQVQAAA APVASSEKKA VVAAGAGAKR PTKDRHTKVE GRGRRIRMPA LCAARVFQLT  180
RELGHKTDGE TIEWLLQQAE PAIVAATGTG TIPANFSSLA VSLRSAASHS SSPRAAPFHH  240
LQQQQQHDVA AMLGFHHHHH QLLPPPPPHQ HPEPTPQDPG AGEFMRKRYR EADDLFKDTS  300
RQDPVDGATG EAEQKARAAA AAAAPPPTAP SAMWAVGPNT TGATAAFWMQ PAWAFPHGAG  360
AGAAGNTVQA PLQFMSRSSF PTAMNVTMAD NNNSSNNNLG MLAALNAGGG GRSGEHQHQH  420
EGQSPAEMDH QRRANGGGGE AGGAASSQFR MIINQFAIVR GFTSPESI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	7e-37	TCP family protein

Link Out ? help Back to Top
Ensembl	ONIVA11G04610.1