PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G08300.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 418aa MW: 46675.3 Da PI: 6.0747

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G08300.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.7	5.9e-21	194	276	2	82
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 fY++YA ++GF+vr sks s+ ++ i++r+fvC+++g ++++++ ++k+rr+ra+ r C a+l+v+++ +++w v++++ ONIVA11G08300.1 194 FYCTYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVNRRPSSRWLVSRCH 276 9************************************999988787999**************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MCAKICARIG DGGCISLDDE EVPPPVVPEL CAALPPPQPV AEVQVCSEEV LVIAVPVPNE 60 ERAIVLHKPD DAARNLLLGP LRPEFPLRVS PDWIHGLKST GLREARDLHG RDLHRALFEE 120 LTMDETSNLT MVPWVPVPSN SQEASTSGAA TTTTEMMDAE DTSMEDAAAV TGPSSAGEPA 180 AGMEFASPEE ARAFYCTYAA RAGFRVRSSK SFASRIDDAI IMRRFVCTRQ GLPSRKDTLL 240 DASKKRRNRA SARAACPAML QVNRRPSSRW LVSRCHSTLK DELKECVTEL ERIDEFESTW 300 RMLLSKYNLF GNEWLQTIYS IRHQWVPAYL KDSFFEEGAT SEEIYKTAKE ALQKAFAEIL 360 PQSGRLIRIM SMNMLLSPFR TDVELDALCQ KGNCINYRKQ QHNCTMSSIS HPLNHSFI

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MCAKICARIG DGGCISLDDE EVPPPVVPEL CAALPPPQPV AEVQVCSEEV LVIAVPVPNE  60
ERAIVLHKPD DAARNLLLGP LRPEFPLRVS PDWIHGLKST GLREARDLHG RDLHRALFEE  120
LTMDETSNLT MVPWVPVPSN SQEASTSGAA TTTTEMMDAE DTSMEDAAAV TGPSSAGEPA  180
AGMEFASPEE ARAFYCTYAA RAGFRVRSSK SFASRIDDAI IMRRFVCTRQ GLPSRKDTLL  240
DASKKRRNRA SARAACPAML QVNRRPSSRW LVSRCHSTLK DELKECVTEL ERIDEFESTW  300
RMLLSKYNLF GNEWLQTIYS IRHQWVPAYL KDSFFEEGAT SEEIYKTAKE ALQKAFAEIL  360
PQSGRLIRIM SMNMLLSPFR TDVELDALCQ KGNCINYRKQ QHNCTMSSIS HPLNHSFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	1e-15	FAR1 family protein

Link Out ? help Back to Top
Ensembl	ONIVA11G08300.1