PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G11880.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 458aa MW: 46979 Da PI: 7.1859

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G11880.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.6e-09	284	331	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq ONIVA11G11880.2 284 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 331 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVHEAALMD 60 ELASRLGGVC GGGLGGGGVP SPPSSSRYAS CYSTPVGSPC KPAPAPPVPS LLAAADAMIA 120 ERAARMSCLA AAGHGGGKLS RAASSQSLLA EPAAAGGVHQ LPASDGSSSD APSRKRKAPG 180 SKARGKDAAT SIAKVLPLLS ASPLQSQRRT SPETMVNFPQ SPEPGTKAKK CKLSADAAGD 240 EDTKPVAGDA GHGGNGKGKV LDAAGEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM 300 KLLQDLVPGC NKVTGKAVML DEIINYVQSL QRQVEFLSMK LSTVNPQLDF DVDNFIPKDQ 360 ANDPSMPAPL SLPPPPPPLS YSPEGASPGI CYASSQGTAM QSVVTSTKHL ETAPTFANHH 420 VIPVPSLDGF HSAHSQAGSC MWEDDLQSVV QMGFRGNT

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVHEAALMD  60
ELASRLGGVC GGGLGGGGVP SPPSSSRYAS CYSTPVGSPC KPAPAPPVPS LLAAADAMIA  120
ERAARMSCLA AAGHGGGKLS RAASSQSLLA EPAAAGGVHQ LPASDGSSSD APSRKRKAPG  180
SKARGKDAAT SIAKVLPLLS ASPLQSQRRT SPETMVNFPQ SPEPGTKAKK CKLSADAAGD  240
EDTKPVAGDA GHGGNGKGKV LDAAGEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM  300
KLLQDLVPGC NKVTGKAVML DEIINYVQSL QRQVEFLSMK LSTVNPQLDF DVDNFIPKDQ  360
ANDPSMPAPL SLPPPPPPLS YSPEGASPGI CYASSQGTAM QSVVTSTKHL ETAPTFANHH  420
VIPVPSLDGF HSAHSQAGSC MWEDDLQSVV QMGFRGNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	6e-54	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA11G11880.2