PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G11880.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 490aa MW: 50339.8 Da PI: 7.085

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G11880.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.5	3.6e-06	323	363	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + +k Ka +L + ++Y++sLq ONIVA11G11880.3 323 VRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 363 6****************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVHEAALMD 60 ELASRLGGVC GGGLGGGGVP SPPSSSRYAS CYSTPVGSPC KPAPAPPVPS LLAAADAMIA 120 ERAARMSCLA AAGHGGGKLS RAASSQSLLA EPAAAGGVHQ LPASDGSSSD APSRKRKAPG 180 SKARGKDAAT SIAKVLPLLS ASPLQSQRRT SPETMVNFPQ SPEPGTKAKK CKLSADAAGD 240 EDTKPVAGDA GHGGNGKGKV LDAAGEPPKD YIHVRARRGQ ATDSHSLAER VNTAGVYAAI 300 HNFVFSSILA FADAIAAVFH LQVRREKISE RMKLLQDLVP GCNKVTGKAV MLDEIINYVQ 360 SLQRQVEFLS MKLSTVNPQL DFDVDNFIPK DQANDPSMPA PLSLPPPPPP LSYSPEGASP 420 GICYASSQGT AMQSVVTSTK HLETAPTFAN HHVIPVPSLD GFHSAHSQAG SCMWEDDLQS 480 VVQMGFRGNT

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVHEAALMD  60
ELASRLGGVC GGGLGGGGVP SPPSSSRYAS CYSTPVGSPC KPAPAPPVPS LLAAADAMIA  120
ERAARMSCLA AAGHGGGKLS RAASSQSLLA EPAAAGGVHQ LPASDGSSSD APSRKRKAPG  180
SKARGKDAAT SIAKVLPLLS ASPLQSQRRT SPETMVNFPQ SPEPGTKAKK CKLSADAAGD  240
EDTKPVAGDA GHGGNGKGKV LDAAGEPPKD YIHVRARRGQ ATDSHSLAER VNTAGVYAAI  300
HNFVFSSILA FADAIAAVFH LQVRREKISE RMKLLQDLVP GCNKVTGKAV MLDEIINYVQ  360
SLQRQVEFLS MKLSTVNPQL DFDVDNFIPK DQANDPSMPA PLSLPPPPPP LSYSPEGASP  420
GICYASSQGT AMQSVVTSTK HLETAPTFAN HHVIPVPSLD GFHSAHSQAG SCMWEDDLQS  480
VVQMGFRGNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-47	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA11G11880.3