PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G12740.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 388aa MW: 41974.4 Da PI: 8.1281

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G12740.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.6	6.7e-11	59	82	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ ONIVA11G12740.2 59 EPDCSYYMRTGLCRFGMTCKFNHP 82 789********************8 PP
2	zf-CCCH	39	1.3e-12	104	128	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ ONIVA11G12740.2 104 QPECQYYLKTGTCKFGATCKFHHPR 128 799********************96 PP
3	zf-CCCH	24.7	4.2e-08	150	169	3	22
S---SGGGGTS--TTTTT-S CS zf-CCCH 3 telCrffartGtCkyGdrCk 22 +++C +++rtG+Ck+G++C+ ONIVA11G12740.2 150 EKECAYYLRTGQCKFGSTCH 169 679****************8 PP
4	zf-CCCH	39.8	7.7e-13	255	280	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ ONIVA11G12740.2 255 DQPECQFYMKTGDCKFGAVCKFHHPK 280 689*********************96 PP
5	zf-CCCH	38.6	1.7e-12	300	326	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G++CkF H++ ONIVA11G12740.2 300 PGEPICTFYSRYGICKFGPNCKFDHPM 326 5799*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP 60 DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA 120 TCKFHHPREK AAIATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTCHS SYAQVIVPPG 180 LVQVPGWNPY AAQIGSSSSD DQQRTAGGAQ YYTGSRHSET PNMGDQGMFS SYQAGSVPLG 240 LYTVQRESIF PERPDQPECQ FYMKTGDCKF GAVCKFHHPK ERIIPTPNCA LSSLGLPLRP 300 GEPICTFYSR YGICKFGPNC KFDHPMGTVM YGLATSPTGD VSARRMLAPV PAHSEVSPDN 360 VSGRSRRITH SDSQQIPSGE RGTEREAS

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP  60
DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA  120
TCKFHHPREK AAIATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTCHS SYAQVIVPPG  180
LVQVPGWNPY AAQIGSSSSD DQQRTAGGAQ YYTGSRHSET PNMGDQGMFS SYQAGSVPLG  240
LYTVQRESIF PERPDQPECQ FYMKTGDCKF GAVCKFHHPK ERIIPTPNCA LSSLGLPLRP  300
GEPICTFYSR YGICKFGPNC KFDHPMGTVM YGLATSPTGD VSARRMLAPV PAHSEVSPDN  360
VSGRSRRITH SDSQQIPSGE RGTEREAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-142	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA11G12740.2