PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G13830.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 182aa    MW: 20782.7 Da    PI: 9.0779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G13830.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS23.75.4e-08337165200
             GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                      L k Ae+l+vpf+fn+ v++rl++l++e+Lrvk+gE
  ONIVA11G13830.1   3 LMKEAERLDVPFQFNP-VVSRLDALDVESLRVKTGE 37 
                      7899************.7****************99 PP
2GRAS96.53.9e-3055171235361
             GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                      sPkv+vv+ qea+hn++ + erf+eal+yy+alfd le++++r s e + vEr llg+ei+n+      +    he+le+W +rle aGF+ vp
  ONIVA11G13830.1  55 SPKVMVVTKQEASHNAALLTERFVEALNYYAALFDGLEVGAARGSVEHTRVERWLLGEEIMNI------W----HERLERWVRRLEGAGFGRVP 138
                      8*************************************************************8......4....89999*************** PP

             GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlg 361
                      ls++a  qa+++ +  + dg++v ee+g ++l 
  ONIVA11G13830.1 139 LSYYALLQARRVAQGLGCDGFKVREEKGNFFLF 171
                      ****************************99873 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MALMKEAERL DVPFQFNPVV SRLDALDVES LRVKTGERRS QESGLSPSTS RADASPKVMV  60
VTKQEASHNA ALLTERFVEA LNYYAALFDG LEVGAARGSV EHTRVERWLL GEEIMNIWHE  120
RLERWVRRLE GAGFGRVPLS YYALLQARRV AQGLGCDGFK VREEKGNFFL FFVSTWRGRR  180
FD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-40GRAS family protein