PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G01620.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 100aa    MW: 10736.3 Da    PI: 9.7244
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G01620.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF663.9e-211360249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      i+nk +rqvtf+kRr g++KKA+EL  L +a +av++fs+t+  y +
  ONIVA12G01620.1 13 HIDNKERRQVTFTKRRGGLFKKASELALLAGASIAVVVFSETNLAYAF 60
                     69****************************************998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    
MRPLGRTSKG RQHIDNKERR QVTFTKRRGG LFKKASELAL LAGASIAVVV FSETNLAYAF  60
GDPSVDAVLL SYGPVPGEDA EPAPVHSGGL GKDVDLEMLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-19M-type_MADS family protein