PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G04090.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 417aa MW: 42429.2 Da PI: 6.1836

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G04090.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136.7	2e-42	104	249	3	125
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgk 89 +k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + ++s ssasn++ ++ ONIVA12G04090.1 104 LAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSslnisirSGAASASSASNPNRAS 197 689*****************************************************************88766666665566666666666666 PP TCP 90 aaksaa.kskksqksaasalnlakesr...............akarararer 125 ++ a +++++q++ +++l ++++ a a +r+r+r ONIVA12G04090.1 198 PFPALAlHPHHQQHDVSAMLGYHHHLLpppqqqqespqdpggAGAFMRKRYR 249 6666666888888888888888875445666666666666555555554444 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MDHGGGGGGG GAAPSSSNSG GGSGGGGGGG GRENHPHHPF YYSGPAAAAA AAAAAQQQQQ 60 TFMGALAITP VVAEQPQGSS GGGEKKVVAP TTPAAAGAAA TTTLAKRPSK DRHTKVDGRG 120 RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSSLNISI 180 RSGAASASSA SNPNRASPFP ALALHPHHQQ HDVSAMLGYH HHLLPPPQQQ QESPQDPGGA 240 GAFMRKRYRE DLFKEDDDRQ DPSAPKAREQ QPTTPQAAAA AAAAAMWAVA PNTAAPGGAF 300 WMLPVSASSA AAARPTEQPM WSFAGGGGGA ATVQAPLQFM STRVNYPGSA GAGMSDTNLG 360 MLAALNAYNR GGAGDQQPQQ QPEMDQQGRN DDDDDDGDDS GDEDNGGANN NNNNSSQ

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MDHGGGGGGG GAAPSSSNSG GGSGGGGGGG GRENHPHHPF YYSGPAAAAA AAAAAQQQQQ  60
TFMGALAITP VVAEQPQGSS GGGEKKVVAP TTPAAAGAAA TTTLAKRPSK DRHTKVDGRG  120
RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSSLNISI  180
RSGAASASSA SNPNRASPFP ALALHPHHQQ HDVSAMLGYH HHLLPPPQQQ QESPQDPGGA  240
GAFMRKRYRE DLFKEDDDRQ DPSAPKAREQ QPTTPQAAAA AAAAAMWAVA PNTAAPGGAF  300
WMLPVSASSA AAARPTEQPM WSFAGGGGGA ATVQAPLQFM STRVNYPGSA GAGMSDTNLG  360
MLAALNAYNR GGAGDQQPQQ QPEMDQQGRN DDDDDDGDDS GDEDNGGANN NNNNSSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-44	TCP family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G04090.1