PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G05970.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 260aa    MW: 28650.8 Da    PI: 5.0048
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G05970.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.56.3e-2599189289
             FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      fYneYA+ +GF  r+ +s++s  +++ +++++fvCs+eg +++++ +   + +++r+ra+ r gC+a+++v ++ +++w+v+kle+ HnH+l
  ONIVA12G05970.1  99 FYNEYARWLGFPFRVGRSRRSkGMEEVVIMKRFVCSREGAHKKKQPStsgEATSKRERASMREGCNAMMEVVRD-KDHWVVSKLEKAHNHSL 189
                      9*******************944567789***********9999888787888999***************999.9**************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MEDDERGDGD ELIADYVDCL MSLDTNSRSC QNDALILEGA PDDVDDDAAA AAAAAAEQDV  60
MRDFAPGDGD GDGDADAEND PKEPVLGMTF ESDEAAKMFY NEYARWLGFP FRVGRSRRSK  120
GMEEVVIMKR FVCSREGAHK KKQPSTSGEA TSKRERASMR EGCNAMMEVV RDKDHWVVSK  180
LEKAHNHSLG IGTRYGYLRA RGLPDVFGIR SASKISVNGT VVGQEAKAHD RNEGQLRDAY  240
LINVKSQMQT AAKTRNHISH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.16e-21FAR1 family protein