PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G08230.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 528aa MW: 57205 Da PI: 6.5588

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G08230.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.2	6.7e-09	109	134	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ ++G C++G +CkF+H+ ONIVA12G08230.1 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134 5789*********************8 PP
2	zf-CCCH	25.9	1.8e-08	239	261	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G Ck+ H ONIVA12G08230.1 239 QEECKYYSTPGGCKFGKACKYLH 261 699******************** PP
3	zf-CCCH	34.6	3.3e-11	286	310	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Cky +CkF+H+ ONIVA12G08230.1 286 GEKECPYYMRTGSCKYATNCKFHHP 310 7899********************9 PP
4	zf-CCCH	19.9	1.3e-06	433	459	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ +Ck++H++ ONIVA12G08230.1 433 PGQPECQHFVKSGFCKFRMKCKYHHPR 459 5789*********************96 PP
5	zf-CCCH	23.7	8.3e-08	478	503	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ ONIVA12G08230.1 478 DQPVCTYYGRYGVCKFGPACAYNHPF 503 6899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL 60 PKPTGWEDGP VVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF 120 GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNNSSNK ASSPDDEQAP KEEYGSYVPD 180 ISPEVDSLGF ADKGSASNLE NFKKYSYEII DVKKGRVEPK ELKVAKEKRK EFISEGSSQE 240 ECKYYSTPGG CKFGKACKYL HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK 300 YATNCKFHHP DPSNVASKDP QLEHENGDAP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI 360 APSPSYSAGM LPPQGMYPPP EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG 420 HQQVPSEEYP ERPGQPECQH FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP 480 VCTYYGRYGV CKFGPACAYN HPFNFSPVPA AGPPLLPAQY PTPGNYTL

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL  60
PKPTGWEDGP VVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF  120
GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNNSSNK ASSPDDEQAP KEEYGSYVPD  180
ISPEVDSLGF ADKGSASNLE NFKKYSYEII DVKKGRVEPK ELKVAKEKRK EFISEGSSQE  240
ECKYYSTPGG CKFGKACKYL HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK  300
YATNCKFHHP DPSNVASKDP QLEHENGDAP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI  360
APSPSYSAGM LPPQGMYPPP EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG  420
HQQVPSEEYP ERPGQPECQH FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP  480
VCTYYGRYGV CKFGPACAYN HPFNFSPVPA AGPPLLPAQY PTPGNYTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-58	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G08230.1