PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G08230.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 508aa MW: 54967.6 Da PI: 6.5579

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G08230.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.3	6.4e-09	109	134	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ ++G C++G +CkF+H+ ONIVA12G08230.2 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134 5789*********************8 PP
2	zf-CCCH	25.9	1.7e-08	219	241	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G Ck+ H ONIVA12G08230.2 219 QEECKYYSTPGGCKFGKACKYLH 241 699******************** PP
3	zf-CCCH	34.6	3.1e-11	266	290	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Cky +CkF+H+ ONIVA12G08230.2 266 GEKECPYYMRTGSCKYATNCKFHHP 290 7899********************9 PP
4	zf-CCCH	19.9	1.3e-06	413	439	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ +Ck++H++ ONIVA12G08230.2 413 PGQPECQHFVKSGFCKFRMKCKYHHPR 439 5789*********************96 PP
5	zf-CCCH	23.8	7.9e-08	458	483	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ ONIVA12G08230.2 458 DQPVCTYYGRYGVCKFGPACAYNHPF 483 6899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL 60 PKPTGWEDGP VVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF 120 GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNNSSNK ASSPDDEQAP KEEYGSYVPD 180 ISPEVDSLII DVKKGRVEPK ELKVAKEKRK EFISEGSSQE ECKYYSTPGG CKFGKACKYL 240 HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK YATNCKFHHP DPSNVASKDP 300 QLEHENGDAP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI APSPSYSAGM LPPQGMYPPP 360 EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG HQQVPSEEYP ERPGQPECQH 420 FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP VCTYYGRYGV CKFGPACAYN 480 HPFNFSPVPA AGPPLLPAQY PTPGNYTL

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL  60
PKPTGWEDGP VVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF  120
GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNNSSNK ASSPDDEQAP KEEYGSYVPD  180
ISPEVDSLII DVKKGRVEPK ELKVAKEKRK EFISEGSSQE ECKYYSTPGG CKFGKACKYL  240
HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK YATNCKFHHP DPSNVASKDP  300
QLEHENGDAP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI APSPSYSAGM LPPQGMYPPP  360
EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG HQQVPSEEYP ERPGQPECQH  420
FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP VCTYYGRYGV CKFGPACAYN  480
HPFNFSPVPA AGPPLLPAQY PTPGNYTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	1e-62	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G08230.2