PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G09610.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 513aa MW: 54656.4 Da PI: 8.7353

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G09610.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.3e-11	128	152	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p ONIVA12G09610.3 128 EPDCSYYMRTGLCRFGMTCKFNHPP 152 789********************97 PP
2	zf-CCCH	38.6	1.8e-12	173	197	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ ONIVA12G09610.3 173 QPECQYYLKTGTCKFGATCKFHHPR 197 799********************96 PP
3	zf-CCCH	30.8	5e-10	219	243	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+ ++CkF+H++ ONIVA12G09610.3 219 EKECAYYLRTGQCKFASTCKFHHPQ 243 679********************97 PP
4	zf-CCCH	39.3	1.1e-12	379	404	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ ONIVA12G09610.3 379 DQPECQFYMKTGDCKFGAVCKFHHPK 404 689*********************96 PP
5	zf-CCCH	37.3	4.7e-12	424	450	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ ONIVA12G09610.3 424 PGEPVCTFYSRYGICKFGPNCKFDHPM 450 5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MAAGAGAGGG GGEGDSNGGG TSPGGVSAAA PAIGPHHLGV AAAEGGGGVI CSVLLVRGSR 60 DGAAMSRAVG VCGRSWGPRG RWLVRVPRWS LGGGDDSMGT PGNKAMWQMT LGGGESMEST 120 PYPERIGEPD CSYYMRTGLC RFGMTCKFNH PPNRKLAVAA ARMNGEYPYR VGQPECQYYL 180 KTGTCKFGAT CKFHHPREKA ALANRVQLNV LGYPMRPNEK ECAYYLRTGQ CKFASTCKFH 240 HPQPSNTMVA IRNSMYSPGQ SATSPGQHTY PGAVTNWTLS RSASFIASPR WPGHSGYAQV 300 IVPQGLVQVP GWNPYAAQMG SSSPDDQQRT PVTTQYYGSR QSETGGMGDH GMYQSYQGGS 360 VPVGVYTVQG ENIFPERPDQ PECQFYMKTG DCKFGAVCKF HHPKERLVPA PNCALNSLGL 420 PLRPGEPVCT FYSRYGICKF GPNCKFDHPM GTLMYGSATS PRGDVSSMHY QLSPSPGHPG 480 ILLDGGSGRS HRVPQSDSQQ IPSGDGNAER EAS

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MAAGAGAGGG GGEGDSNGGG TSPGGVSAAA PAIGPHHLGV AAAEGGGGVI CSVLLVRGSR  60
DGAAMSRAVG VCGRSWGPRG RWLVRVPRWS LGGGDDSMGT PGNKAMWQMT LGGGESMEST  120
PYPERIGEPD CSYYMRTGLC RFGMTCKFNH PPNRKLAVAA ARMNGEYPYR VGQPECQYYL  180
KTGTCKFGAT CKFHHPREKA ALANRVQLNV LGYPMRPNEK ECAYYLRTGQ CKFASTCKFH  240
HPQPSNTMVA IRNSMYSPGQ SATSPGQHTY PGAVTNWTLS RSASFIASPR WPGHSGYAQV  300
IVPQGLVQVP GWNPYAAQMG SSSPDDQQRT PVTTQYYGSR QSETGGMGDH GMYQSYQGGS  360
VPVGVYTVQG ENIFPERPDQ PECQFYMKTG DCKFGAVCKF HHPKERLVPA PNCALNSLGL  420
PLRPGEPVCT FYSRYGICKF GPNCKFDHPM GTLMYGSATS PRGDVSSMHY QLSPSPGHPG  480
ILLDGGSGRS HRVPQSDSQQ IPSGDGNAER EAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-152	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G09610.3