PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G13030.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 301aa    MW: 31999.1 Da    PI: 9.2881
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G13030.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.7e-07165209755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ r RR+ri s+ +eL +l+P a    ++ +s ae+L+ A ++++ Lq
  ONIVA12G13030.1 165 AAARERRRRISSKTAELSRLIPGA----ARMNSTAEMLQAAARHVRLLQ 209
                      567899999**************8....577***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MSTATTRLGV RRPTPAPVFD FDRLLLGSSS GGGMVGDDVV ADALLGFTYD PPAHGAAALD  60
DVLAPLPGAD KRPRERGVVA DGRSFRRAGA ALPAPPTELV TRFVPTPPPL PPVQQQQQQR  120
WELPDAVFVQ GAGVAEAKKG GAAASHDDHD DGRHHHHHNQ AVQSAAARER RRRISSKTAE  180
LSRLIPGAAR MNSTAEMLQA AARHVRLLQA QVGMLALIHS SGEAKAASSM AASREHHQMM  240
MMRALLASGG VQERLAGEGR CLVPTSLVRA IADDDAMATS NPALSRDVNS FKDSLDQQQQ  300
Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-20bHLH family protein