PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G13220.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MIKC_MADS

Protein Properties

Length: 231aa MW: 25908.4 Da PI: 6.2522

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G13220.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.7	1.8e-24	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien+ rqvtfskRr g+lKKA+E+ vLCd++va i+fs +g+l+ y+s ONIVA12G13220.1 10 RIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYAS 59 8**********************************************986 PP
2	K-box	68.2	2.6e-23	93	173	16	96
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 s++ ++ kL+ +ie L+++qR+l+G++L+sL+l+++qqLe+q+++sl++iRs+K++ll+e+ l kk el+ ++++r+ ONIVA12G13220.1 93 SMSYDHIKLRGKIEALKKSQRNLMGQELDSLTLQDIQQLEDQIDTSLNNIRSRKEKLLMEKNTILEKKITELETLHTSIRA 173 6888999*******************************************************************9999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MGRGKVQVRR IENEVSRQVT FSKRRPGLLK KAHEIAVLCD VDVAAIVFSA KGNLFHYASS 60 HTTMERILEK YDRHELLSEG NNVIEEFPEL EGSMSYDHIK LRGKIEALKK SQRNLMGQEL 120 DSLTLQDIQQ LEDQIDTSLN NIRSRKEKLL MEKNTILEKK ITELETLHTS IRASPTEAAA 180 PPACNTADAF VPNLNICCGD SGEPETVTAP LGWTSSNNGL PWWMLQSSSN C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	8e-48	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G13220.1