PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G13790.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 234aa    MW: 26646.8 Da    PI: 4.8045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G13790.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-101601991054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++RR+riN+++  L+el+P+      +K++ +++Le+A++Y+k L
  ONIVA12G13790.1 160 KNRRQRINERLRILQELIPNG-----TKVDISTMLEEAIQYVKFL 199
                      89*****************97.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MPANLKPFQA PTQYIYTFSL QLQFAPYSQN HCSGSAMECS SFEAICNESE MIAHLQSLFW  60
SSSDADPCFG SSSFSLISSE GYDTMTTEFV NSSTNVCFDY QDDSFVSAED TTIGNKRKVQ  120
MDTENELMMN RSKEVRTKMS VSKACKHSVS AESSQSYYAK NRRQRINERL RILQELIPNG  180
TKVDISTMLE EAIQYVKFLH LQIKLLSSDE MWMYAPLAFD SGNNRLYQNS LSQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-35bHLH family protein