PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G15960.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 304aa    MW: 32970.3 Da    PI: 4.644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G15960.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-112322721055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  ONIVA12G15960.1 232 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 272
                      9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MEGGGLIADM SWTVFDLPSH SDESEMMAQL FSAFPIHGEE EGHEQLPWFD QSSNPCYYSC  60
NASSTAYSNS NASSIPAPSE YEGYCFSDSN EALGVSSSIA PHDLSMVQVQ GATEFLNVIP  120
NHSLDSFGNG ELGHEDLDSV SGTNKRKQSA EGEFDGQTRG SKCARKAEPK RAKKAKQTVE  180
KDASVAIPNG SCSISDNDSS SSQEVADAGA TSKGKSRAGR GAATDPQSLY ARKRRERINE  240
RLKTLQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DEMWMYAPIA YNGMNIGLDL  300
NIDT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-52bHLH family protein