PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G16570.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 243aa MW: 26240.7 Da PI: 7.8546

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G16570.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.9	1.8e-08	156	182	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h E+rRR+riN++f L++l+P + ONIVA12G16570.1 156 THGLTEKRRRSRINEKFKMLQRLVPGC 182 78999********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MMSFPYSSGD LGEATTAAAA AVDMITLDQI FRDYDASTGD DLFELVWESC GGGEIDSGAG 60 EVQPAGVPCC RRLLPGSSPE PTSEDEMAAW LSTIVTGSGG GGGDDVAAGG DHQDPAVKKP 120 DGEPLTEKMD KKLPTRTEER QRVKHKARRN PGYAETHGLT EKRRRSRINE KFKMLQRLVP 180 GCDKAMYPTM VRPAAVYPVV QPPPAFAAGG PPAASQGGLH RHRRLMVVVS VHHRCRCFRL 240 GRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	1e-07	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G16570.1