PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G16650.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 216aa    MW: 23551.5 Da    PI: 4.4374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G16650.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12971381055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++RR +iN+ + +L++l+P +    +k ++ a++L k+++Y+ksLq
  ONIVA12G16650.1  97 QKRRCKINENLKTLQQLVPGC----DKSNNQASTLDKTIRYMKSLQ 138
                      79******************9....788*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MEMTSYNDVD AGDMFAAADY YSAGDGGDLF DMVWPGRRRR RQEDNTSGCL PLSPPPPPPE  60
LAVDDQLLAG GDGGGSEPVA VAVAEDDDSG ERWTENQKRR CKINENLKTL QQLVPGCDKS  120
NNQASTLDKT IRYMKSLQQH VQAMSVGCIM KPAAAGVSYQ PFPQPPPPEA VTCWSSWRRS  180
PQDPGMPLLD LPPPPLPLST TTTMTCSLTS SFCWCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-13bHLH family protein