PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G17590.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YA
Protein Properties Length: 197aa    MW: 21889.5 Da    PI: 7.1773
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G17590.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA54.15.2e-17108148142
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheS 42 
                      +ep+YVNaKQy++Il+RRq+Rak+e+ekkl  k+rk  l  S
  ONIVA12G17590.1 108 EEPVYVNAKQYNAILRRRQSRAKAESEKKL-VKGRKFELVRS 148
                      69****************************.9***9888777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MTSVVHDVSG NHGADERQKQ QRQGEPEDQQ EASVTSTDSH TMVATPSTDY ATPYAHHDMA  60
HAMGQIAYAN IDPYYGSLYA AYGGQPMMHP PLVGMHPAGL PLPTDAIEEP VYVNAKQYNA  120
ILRRRQSRAK AESEKKLVKG RKFELVRSTS EQQLASSSRL NSPIYISHFH TKINLLYYFD  180
SSALCSHISM SHGINMP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-27NF-YA family protein