PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G17590.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YA
Protein Properties Length: 217aa    MW: 23721.1 Da    PI: 9.5575
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G17590.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.6e-33108164158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e+ekkl  k+rkpylheSRh+hAl+R+Rg gGrF
  ONIVA12G17590.2 108 EEPVYVNAKQYNAILRRRQSRAKAESEKKL-VKGRKPYLHESRHQHALKRARGAGGRF 164
                      69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MTSVVHDVSG NHGADERQKQ QRQGEPEDQQ EASVTSTDSH TMVATPSTDY ATPYAHHDMA  60
HAMGQIAYAN IDPYYGSLYA AYGGQPMMHP PLVGMHPAGL PLPTDAIEEP VYVNAKQYNA  120
ILRRRQSRAK AESEKKLVKG RKPYLHESRH QHALKRARGA GGRFLNSKSD DKEEHSDSSS  180
RDKQDGVAPR DSGQPSTSPS SKGASSAKQN KKSKTSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.25e-44NF-YA family protein