PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G17870.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 297aa MW: 30838.7 Da PI: 8.8686

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G17870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.4	5.4e-34	43	182	1	112
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasn 84 aag+kdrhsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+ieWL+++a +ai++l+++ ss+++ + +++++s++++ ONIVA12G17870.1 43 AAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSLdcsfalpaaaSSPPP-PAADDAEVSTSET 135 6899***************************************************************9999877533333.2233333333333 PP TCP 85 sssg...................kaaksaakskksqksaasalnlak 112 s+s+ ++++++ sk+ q++++++l++ + ONIVA12G17870.1 136 SKSSvlslanapcdngggafaelLHCSNTNGSKPLQQQQQATLAYYA 182 33336777788888999999999555555533333333333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MEEVVGGGKE RKRPRGALVG VGGGGASAAT AAAWRTSRVA RAAAGGKDRH SKVVTSRGLR 60 DRRVRLSVPT AIAFYDIQDR LGVDQPSKAI EWLIRAAAAA IDALPSLDCS FALPAAASSP 120 PPPAADDAEV STSETSKSSV LSLANAPCDN GGGAFAELLH CSNTNGSKPL QQQQQATLAY 180 YAAAQSAHMA APMSFEVMAM PPHLAFSQEQ QQHATVAAFD RGTLQSNASL WPPPPQPPPS 240 QHPFLLQRFA AAPAEVAGLP FFLAGGVGGA AAAAPAATTN GGERRLQLWD FKEERKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	3e-20	TCP family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G17870.1