PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G18400.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 365aa    MW: 38395 Da    PI: 6.5145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G18400.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09185233355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  ONIVA12G18400.1 185 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 233
                      58*************************9....556*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MDANGGNGFG VESNASAVHG GMAMAWQWHG GQMSGGSSCA AAPPPVQQPA MDSLAWSSTV  60
SPSTGAATAA SGAGFLLPPA AVRGGFGSFP VNSGGIVEPA GDCSSESKKR RSDEIAGTDH  120
ANASNALADS GNETECSKDV NGEVIGPPAT AAAGGKSKGK GAKDAGEAQK EGYSHVRARK  180
GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAL MLDEIINYVQ SLQRQVEFLS  240
MKLSAVNPRI DLDIESLVNN SKDVLRFPGQ PSSAPMGFSF STEMMPGLQL SRPGILQGGV  300
HGMINPDVFT SLMQKQQQND KGAFREPQMH QTLDGSFRNT AQMPYPQVMS SEELSIRQDQ  360
DGFHM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.33e-47bHLH family protein