PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OVA00894.1
Organism
Macleaya cordata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
Family LBD
Protein Properties Length: 245aa    MW: 26158.1 Da    PI: 7.4602
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OVA00894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.37.4e-40461471101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC ++C++apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael++++
  OVA00894.1  46 PCGACKFLRRKCINGCIFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNQRHDATVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSMVQ 144
                 7***********************9989*********************************************************************99 PP

      DUF260  99 eel 101
                 ++l
  OVA00894.1 145 AQL 147
                 985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MDDKQGDDTS DKPSFERTRR GGGGGGGTGK RVALPVSSSA ATSTAPCGAC KFLRRKCING  60
CIFAPYFGSD QGAARFAAVH KVFGASNVSK LLLHIPVNQR HDATVTISYE AQARLSDPVY  120
GCVSTILALQ QQVASLQAEL SMVQAQLINS RLAVANALQT SQQQQQIAVL QPAYSNNSSA  180
SNNLVNLTSS YPSNFDLTGE TGASSRSLIN KPLQHSGPSV QDDEDEDEEE SRHPVIFANQ  240
MLNRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-59LBD family protein