PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA01119.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 444aa MW: 48612.5 Da PI: 8.4126

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA01119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36	1.2e-11	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+F+H+ OVA01119.1 48 PGEPDCIYYLRTGLCGYGSNCRFNHP 73 5789*********************8 PP
2	zf-CCCH	36.1	1.1e-11	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtC++G++Ck++H++ OVA01119.1 92 QPDCQYFLKTGTCRFGATCKYNHPR 116 789********************96 PP
3	zf-CCCH	31.2	3.7e-10	139	161	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ OVA01119.1 139 SCPYYMRTGACKFGFACKFHHPQ 161 6********************97 PP
4	zf-CCCH	41.9	1.7e-13	282	307	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ OVA01119.1 282 DQPECQYYMKTGTCKFGPTCKFHHPK 307 689*********************96 PP
5	zf-CCCH	33.6	6.5e-11	328	352	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +G+Ck+G++CkF H+ OVA01119.1 328 GQDVCSFYNLYGICKFGSTCKFDHP 352 6789********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MPDNWKVKIN AVNASSDNLE EAMWRLKIQT QDKQNGIAAH SSLYPDRPGE PDCIYYLRTG 60 LCGYGSNCRF NHPSYPGQDA HYRGELPERA GQPDCQYFLK TGTCRFGATC KYNHPRDKHD 120 AGQVPLNMLG LPIRQEEKSC PYYMRTGACK FGFACKFHHP QPAALGSLSP ATGNPAYGST 180 GSSVAPPSSG LPYVGGLPAW SLPRTPYLSG PRMQGPQAYM PVVLSSSQGI IPAQQGWNTY 240 PGTANPVSSS FVYTPKHQDE LGSSGQVHML QTSAPQFPER PDQPECQYYM KTGTCKFGPT 300 CKFHHPKERL APLATSALGP FGLPLRPGQD VCSFYNLYGI CKFGSTCKFD HPLTGFYNYN 360 LSMPTLSIPD PPNFSYQKNS PKACSSENSP SKSSRSPDQN GKPEVTTTKH QNLDMKASED 420 PSKQAVSSVN TSQTPPESPQ DKSQ

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MPDNWKVKIN AVNASSDNLE EAMWRLKIQT QDKQNGIAAH SSLYPDRPGE PDCIYYLRTG  60
LCGYGSNCRF NHPSYPGQDA HYRGELPERA GQPDCQYFLK TGTCRFGATC KYNHPRDKHD  120
AGQVPLNMLG LPIRQEEKSC PYYMRTGACK FGFACKFHHP QPAALGSLSP ATGNPAYGST  180
GSSVAPPSSG LPYVGGLPAW SLPRTPYLSG PRMQGPQAYM PVVLSSSQGI IPAQQGWNTY  240
PGTANPVSSS FVYTPKHQDE LGSSGQVHML QTSAPQFPER PDQPECQYYM KTGTCKFGPT  300
CKFHHPKERL APLATSALGP FGLPLRPGQD VCSFYNLYGI CKFGSTCKFD HPLTGFYNYN  360
LSMPTLSIPD PPNFSYQKNS PKACSSENSP SKSSRSPDQN GKPEVTTTKH QNLDMKASED  420
PSKQAVSSVN TSQTPPESPQ DKSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-103	C3H family protein