PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA02923.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 376aa MW: 41157.2 Da PI: 6.7732

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA02923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.3e-08	117	141	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaHg OVA02923.1 117 FKTKLCCKFRT-GTCPYITNCNFAHG 141 69*******.***********8 PP
2	zf-CCCH	18.5	3.6e-06	191	216	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ OVA02923.1 191 YKGRHCKKFYTEEGCPYGDNCTFLHD 216 77888********************7 PP
3	zf-CCCH	44.5	2.5e-14	251	276	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OVA02923.1 251 WKTRICNKWEMTGYCPFGSKCHFAHG 276 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MDYGGEAGFS GGNVGQIIPE IPSSGSMDNW IPGLNDQAIW ATEDDYGLWN GDLSSDTPSN 60 SNYDGRQSQT RSGSEPPNKK SRNNSQGGDS IGSGFGRDFP SSANRSRDSR VIGKMFFKTK 120 LCCKFRTGTC PYITNCNFAH GIEELRKPPP NWQEIVAAQD EDRGLLSEPR EEHQIPSLSS 180 SGLSGESQRS YKGRHCKKFY TEEGCPYGDN CTFLHDEQSK ARESVAISLG PTIGSGYGNN 240 ANGSSQKPSN WKTRICNKWE MTGYCPFGSK CHFAHGLGEL HRYGGGLVDT DGRESSLAPP 300 DQKQVGVPSK TPMDSVVPST TSAPHADVYH MGIPSQRSSA VNQRPGQRPL QKWKGPDKIS 360 RIYGDWIDDN EMEPAR

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MDYGGEAGFS GGNVGQIIPE IPSSGSMDNW IPGLNDQAIW ATEDDYGLWN GDLSSDTPSN  60
SNYDGRQSQT RSGSEPPNKK SRNNSQGGDS IGSGFGRDFP SSANRSRDSR VIGKMFFKTK  120
LCCKFRTGTC PYITNCNFAH GIEELRKPPP NWQEIVAAQD EDRGLLSEPR EEHQIPSLSS  180
SGLSGESQRS YKGRHCKKFY TEEGCPYGDN CTFLHDEQSK ARESVAISLG PTIGSGYGNN  240
ANGSSQKPSN WKTRICNKWE MTGYCPFGSK CHFAHGLGEL HRYGGGLVDT DGRESSLAPP  300
DQKQVGVPSK TPMDSVVPST TSAPHADVYH MGIPSQRSSA VNQRPGQRPL QKWKGPDKIS  360
RIYGDWIDDN EMEPAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-117	C3H family protein