PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA04008.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 606aa MW: 68256.6 Da PI: 6.8966

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA04008.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	1e-06	313	335	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ OVA04008.1 313 KLCFKFISSGSCPRGEKCNFQHD 335 666677778*************7 PP
2	zf-CCCH	18.7	3.2e-06	347	367	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +f+ G C +G+ C+F H+ OVA04008.1 347 CIDFLIKGKCERGPDCRFKHS 367 9*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MAPPRILLCG DVLGRLNQLF KRVSTVNKST GPFDVLLCVG QFFPDSPDRL EEFLDYVEGR 60 SEIPIPTYFI GDYGIGAPKV LSIASNDSAN RGFKMDGLRL CDNLYWLKGS GKFTLHGLSL 120 VYLSGRHLSD NQQIGVYSQD DVDALRAWAE DPGIVDLFLT YPCFSYEVFS DISEAPPGVS 180 DSSGTDPVIS KLVAEIKPRY HIAGTKGVFY SREPYSNDEA VHATRFLGLA PVGNKDKQKF 240 IHAISPTPAS TMSAAEISSR PPDTTLSPYT IVLKTPHTKE AAKRPSSSVD EEQYWRYDVS 300 QKRQRKGVGD GEKLCFKFIS SGSCPRGEKC NFQHDMDMRE QCMKGVCIDF LIKGKCERGP 360 DCRFKHSLAD KDDKILQRSQ RSENNSRSRE CWFCLSSPSI ESHLVLSIGE NYYFALAKGP 420 LVEDHVLIIP IEHSPNTLSD DPKSEIELER FQNALKMYFK NQGKEVVFFE WIFKHGTHAN 480 LQAIPIPLSK ASLVQRLFNL AAEKLGFKFV AIKSDNKSSE GRKLFKTQFD RKSSCFYVEL 540 PDGTILSHSV EDNEKFPAQF GREVVLAGLL NMADRADWRT CKLSKEDETK MVEVFKKHFE 600 EFDPTL

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MAPPRILLCG DVLGRLNQLF KRVSTVNKST GPFDVLLCVG QFFPDSPDRL EEFLDYVEGR  60
SEIPIPTYFI GDYGIGAPKV LSIASNDSAN RGFKMDGLRL CDNLYWLKGS GKFTLHGLSL  120
VYLSGRHLSD NQQIGVYSQD DVDALRAWAE DPGIVDLFLT YPCFSYEVFS DISEAPPGVS  180
DSSGTDPVIS KLVAEIKPRY HIAGTKGVFY SREPYSNDEA VHATRFLGLA PVGNKDKQKF  240
IHAISPTPAS TMSAAEISSR PPDTTLSPYT IVLKTPHTKE AAKRPSSSVD EEQYWRYDVS  300
QKRQRKGVGD GEKLCFKFIS SGSCPRGEKC NFQHDMDMRE QCMKGVCIDF LIKGKCERGP  360
DCRFKHSLAD KDDKILQRSQ RSENNSRSRE CWFCLSSPSI ESHLVLSIGE NYYFALAKGP  420
LVEDHVLIIP IEHSPNTLSD DPKSEIELER FQNALKMYFK NQGKEVVFFE WIFKHGTHAN  480
LQAIPIPLSK ASLVQRLFNL AAEKLGFKFV AIKSDNKSSE GRKLFKTQFD RKSSCFYVEL  540
PDGTILSHSV EDNEKFPAQF GREVVLAGLL NMADRADWRT CKLSKEDETK MVEVFKKHFE  600
EFDPTL