PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA07779.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

LSD

Protein Properties

Length: 94aa MW: 9890.55 Da PI: 7.575

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA07779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	31.2	3.7e-10	22	46	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lLs+ GA +V+Ca+C+tV OVA07779.1 22 CGTCRSLLSFQKGALRVKCASCQTV 46 ************************9 PP
2	zf-LSD1	44.3	2.9e-14	60	84	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GApsV+C++C+ + OVA07779.1 60 CGSCSVLLMYPYGAPSVKCSCCHSI 84 **********************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence
METQGAELQS ISPSPEMGQM VCGTCRSLLS FQKGALRVKC ASCQTVNLVL EAHQVGNVKC 60 GSCSVLLMYP YGAPSVKCSC CHSITEIGVS SICN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	7e-34	LSD family protein