PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA07805.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

LSD

Protein Properties

Length: 177aa MW: 18865.9 Da PI: 8.4405

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA07805.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.8	7.3e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA +V+Ca+C+t+ OVA07805.1 7 CSGCRSILLYPRGAANVCCAICNTI 31 ***********************97 PP
2	zf-LSD1	49.4	7.6e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+t+ OVA07805.1 46 CGGCRTLLMYTRGATSVRCSCCHTI 70 ***********************97 PP
3	zf-LSD1	46.7	5.2e-15	85	109	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+ V OVA07805.1 85 CGQCHTTLMYPYGAPSVKCAVCHYV 109 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MQSQLVCSGC RSILLYPRGA ANVCCAICNT ITSVPPPGMD MSQLVCGGCR TLLMYTRGAT 60 SVRCSCCHTI NLARPASNQV AHVNCGQCHT TLMYPYGAPS VKCAVCHYVT NIGMNTMRAP 120 TTVNRPWSST MPTSMPSTST PMQQTHSQTV VVENPMSVDE SGKLVSNVVV GVTAEKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	8e-68	LSD family protein