PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA08310.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 672aa MW: 76577.3 Da PI: 9.0471

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA08310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.6	9.2e-08	482	502	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 C+++a+ G C++G++Ck+ H OVA08310.1 482 QVCHYYAQ-GRCRFGANCKYLH 502 68****.*********** PP
2	zf-CCCH	18.5	3.6e-06	527	548	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + C+++a+ G C +G++Ck+ H OVA08310.1 527 RQVCQYYAK-GKCYFGENCKYLH 548 568****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MKKIEEKPMD ESVGENQVED EESGNEGFED DSEEDPTFDI LEETRSGFSK LSLKKSKSRI 60 SKVIDSGSQE EADDVEVKLP ELDAKDLKSF ENVEKMIAAG QLEKLKVDQC KVYLRKNGLR 120 LTGNKDVLIE RIREHLGIIN GGGEQKYPVS SFVMNCKGWD ACTGDIVLFE QNVYEMYNIA 180 SRSATGPPCG TRIVAGRIVK ESYGSAKQQH TFTIEVLWSK GVKPLPPLHP LLIKGRNLYR 240 LQTVRQLWAD EEERRKVLQE KHSRGSLARS NRETRIQDKE TRNMLRGQRV TRNESNTTQE 300 QKRRLQPDPF RTDISSPPAV QPQKQQKVVD PVIYRNQPTQ FEQHKPSFPP NTVLTEICQQ 360 NNNSQLEPNV IKSENSNILN PSSVRYQNSN ITEQHHNGIR RVENHQSNGF HFANNTQNHF 420 SGEVHQSHDS NANITELYHN GIREVGNHRS NGFHVANNTQ SHFSGIDHQS HHANGRGPME 480 RQVCHYYAQG RCRFGANCKY LHEDRGKSVN DESICMSPTR GRAPMQRQVC QYYAKGKCYF 540 GENCKYLHED GEKRVNNERI TAEKSFPNGN GSNSNCPWSP TCRSFKSPHP SPTRRSFNSP 600 LHSPTRRSVN SPPWSPTRRS FNSPLRSPTR RSFNAPPWSP NHGRVPMQRQ VCHYDAHGSL 660 QLAACSCRLL ST

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MKKIEEKPMD ESVGENQVED EESGNEGFED DSEEDPTFDI LEETRSGFSK LSLKKSKSRI  60
SKVIDSGSQE EADDVEVKLP ELDAKDLKSF ENVEKMIAAG QLEKLKVDQC KVYLRKNGLR  120
LTGNKDVLIE RIREHLGIIN GGGEQKYPVS SFVMNCKGWD ACTGDIVLFE QNVYEMYNIA  180
SRSATGPPCG TRIVAGRIVK ESYGSAKQQH TFTIEVLWSK GVKPLPPLHP LLIKGRNLYR  240
LQTVRQLWAD EEERRKVLQE KHSRGSLARS NRETRIQDKE TRNMLRGQRV TRNESNTTQE  300
QKRRLQPDPF RTDISSPPAV QPQKQQKVVD PVIYRNQPTQ FEQHKPSFPP NTVLTEICQQ  360
NNNSQLEPNV IKSENSNILN PSSVRYQNSN ITEQHHNGIR RVENHQSNGF HFANNTQNHF  420
SGEVHQSHDS NANITELYHN GIREVGNHRS NGFHVANNTQ SHFSGIDHQS HHANGRGPME  480
RQVCHYYAQG RCRFGANCKY LHEDRGKSVN DESICMSPTR GRAPMQRQVC QYYAKGKCYF  540
GENCKYLHED GEKRVNNERI TAEKSFPNGN GSNSNCPWSP TCRSFKSPHP SPTRRSFNSP  600
LHSPTRRSVN SPPWSPTRRS FNSPLRSPTR RSFNAPPWSP NHGRVPMQRQ VCHYDAHGSL  660
QLAACSCRLL ST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	6e-06	C3H family protein