PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OVA10843.1
Organism
Macleaya cordata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25392.8 Da    PI: 10.0431
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OVA10843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF611.4e-191765149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                krie +  +q+tfskRr g++ KA+EL++LC ae  vi+fs+ gk y +
  OVA10843.1 17 KRIEKQNIKQITFSKRRVGLFQKASELCTLCTAETVVIVFSPAGKSYSF 65
                79*******************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MSSKRKPSMG RQKIEIKRIE KQNIKQITFS KRRVGLFQKA SELCTLCTAE TVVIVFSPAG  60
KSYSFGHPSV DTVVDRYLSG GKYASQNIGG VHPHIRAHVR DLNGQYTEAL TELEAEKKRG  120
MELKKVRRDS RNQHWWKNPI EELGLQELER LKAAMDKLKD NVADRASELL IKDSHFMPTA  180
DPIGTSSSTQ YRYPFEPNPN NLHASAVPNH GYDYRFGFGS PGPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-46M-type_MADS family protein