PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA12028.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

LBD

Protein Properties

Length: 289aa MW: 32602.3 Da PI: 5.0831

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA12028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.2	9.1e-41	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkC++dC+lapyfp +qpk f+n+h+lFG++n+l++lk l+++++ +am+s+vye+++rar Pv G++g+i++lq ql+q+ el+l+++ OVA12028.1 10 ACAACKYQRRKCSADCPLAPYFPPDQPKMFQNAHRLFGVRNILNILKPLDPSQKMEAMRSIVYESNIRARSPVGGCHGIIWQLQYQLQQTLLELQLVNT 108 7*********************************************************************************************99988 PP DUF260 100 e 100 + OVA12028.1 109 Q 109 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MTVKGGTSHA CAACKYQRRK CSADCPLAPY FPPDQPKMFQ NAHRLFGVRN ILNILKPLDP 60 SQKMEAMRSI VYESNIRARS PVGGCHGIIW QLQYQLQQTL LELQLVNTQL AIYRQNQNHP 120 PLPPSQLQLG TTPTTTSPNN TLPLFQHHQP FDPGMSLQAF SNENHPSYSN AVAADYMISK 180 DDIVNPLWMQ HAYNNTSNNN NNNTMAIQSQ LFDEQPISFQ QEADEAPQDY DEMPVFFDTI 240 DDRQSYIDSK EGYESSPESS LRDTTQSIEH VSENELKSAA ACFSLTSVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	5e-43	LBD family protein