PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA12187.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

M-type_MADS

Protein Properties

Length: 448aa MW: 50056.1 Da PI: 6.9612

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA12187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.9	2.7e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+s rqvt+skRr+gilKKA ELS+LCd+++a+++fs+tgk OVA12187.1 9 KRLENTSGRQVTYSKRRAGILKKARELSILCDIDIALLMFSPTGK 53 689****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MGRVKLKIKR LENTSGRQVT YSKRRAGILK KARELSILCD IDIALLMFSP TGKPTLCLGE 60 RSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGTS TQTVEDLTNQ 120 SRLLQAQLSE MHKRLSCWTD PEKINNVDHL RAMEESIKES LNRIRTHKEN LGKQQLMSLE 180 CAQFQNGMHL PLGMGGEQQT QPLSWISSND SQHMMLSEDT NLLPQRDMEC SADPSLHSYS 240 GYLGTGKQAE IDSSGQDGGS LHELSRNACL RLQLGAQFPY PPYNLNLMNN KKFKADGKMS 300 LQEPPMDYQV SSNFEPPRHR YDANDPGWAS TSGHCAVAMF DGSSYPHAQW LWLWLWLWLW 360 CGGDDNSVQV TVVVVVIMMV MIGGSDGGGC GVDLQHRWCS SCGVRNGDRH MAVVRLIIIL 420 VVKECKDDQL VVGGGEFDCG SSNGILGA

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MGRVKLKIKR LENTSGRQVT YSKRRAGILK KARELSILCD IDIALLMFSP TGKPTLCLGE  60
RSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGTS TQTVEDLTNQ  120
SRLLQAQLSE MHKRLSCWTD PEKINNVDHL RAMEESIKES LNRIRTHKEN LGKQQLMSLE  180
CAQFQNGMHL PLGMGGEQQT QPLSWISSND SQHMMLSEDT NLLPQRDMEC SADPSLHSYS  240
GYLGTGKQAE IDSSGQDGGS LHELSRNACL RLQLGAQFPY PPYNLNLMNN KKFKADGKMS  300
LQEPPMDYQV SSNFEPPRHR YDANDPGWAS TSGHCAVAMF DGSSYPHAQW LWLWLWLWLW  360
CGGDDNSVQV TVVVVVIMMV MIGGSDGGGC GVDLQHRWCS SCGVRNGDRH MAVVRLIIIL  420
VVKECKDDQL VVGGGEFDCG SSNGILGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-108	M-type_MADS family protein