PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OVA14243.1
Organism
Macleaya cordata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
Family C3H
Protein Properties Length: 364aa    MW: 40184.7 Da    PI: 8.1438
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OVA14243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.46.6e-15289314126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +ktelC+ +++tG C+yGd C+FaHg
  OVA14243.1 289 FKTELCNKWQETGACPYGDHCQFAHG 314
                 79***********************8 PP
2zf-CCCH20.96.1e-07327351125
                 --S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                 ykte Cr  + +G C+yG rC+F H
  OVA14243.1 327 YKTEVCRMVLSGGNCPYGHRCHFRH 351
                 9**********************88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MQRDDSSSTR GRINSTTDSS PIRSQNEYYY SSSNQNTSSD GTGFTSLESS IFPPKSSLCN  60
SVYQFTPSPS SSNEENNPVA TENRLYLARL TLQYQELMDR YGLCLGYLED ATKQAEVLSQ  120
ENAALRLVNK DLTKRLSLLA ETSLHQNHRY ISSGFPSLSI INDFRSLCIG DNGGTKNNRV  180
VASHEVPVTS PTSVIGINNR FPEKGPQRVS LPKSISIRSS AYLKMNQAGI NAAAAANRTN  240
RLRVATSPLV NGNMQRVYVP AAAAAAAGGE NKEDDQEPLE LDVYNQGMFK TELCNKWQET  300
GACPYGDHCQ FAHGIGELRP VIRHPRYKTE VCRMVLSGGN CPYGHRCHFR HALTEQERIT  360
GTTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.15e-67C3H family protein