PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OVA16472.1
Organism
Macleaya cordata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
Family M-type_MADS
Protein Properties Length: 106aa    MW: 11759.7 Da    PI: 9.5635
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OVA16472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.33.4e-221562249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +i++k   qvtfskRrng++KKA+EL++LC+ae a++++ss gk + +
  OVA16472.1 15 KIKSKDYLQVTFSKRRNGLFKKASELCTLCGAETAIVVYSSAGKAFSF 62
                79999999***********************************98766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    
MEKKTQGRMK IDMEKIKSKD YLQVTFSKRR NGLFKKASEL CTLCGAETAI VVYSSAGKAF  60
SFGHPCVEST MDKFLATASL IEIGESSMGV PSFPDYHRNI GINKLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-32M-type_MADS family protein