PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OVA16555.1
Organism
Macleaya cordata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
Family M-type_MADS
Protein Properties Length: 95aa    MW: 10644.6 Da    PI: 10.4251
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OVA16555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.58.2e-191766150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krie    rqv fsk r g++KKA+E ++LC+ae avi+fs+  k y ++
  OVA16555.1 17 KRIEKRNARQVAFSKCRVGLFKKASEHCTLCGAETAVIVFSPAEKSYSFC 66
                79*******************************************99997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    
MSSKRKPSMG RQKIEIKRIE KRNARQVAFS KCRVGLFKKA SEHCTLCGAE TAVIVFSPAE  60
KSYSFCHPSV DTIVDRYLLG GNYILLKMSV ASTLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-29M-type_MADS family protein