PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA16602.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

MYB

Protein Properties

Length: 421aa MW: 47056 Da PI: 7.8686

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA16602.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl OVA16602.1 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44	5e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ OVA16602.1 67 RGTFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG 120 IDPNTHKPLS EVENGDEKAP TTATTNNNNN NNNSNTTNQK ASGGSNELKF LKVDNSKPGG 180 LGVPEQKSGF SIEGSLGSKI NNNSISVTPT KDFFLDRPSD TMGYFPLHQL NYGSNAGLSV 240 NNPNPSLWFN QETTRPFEMN SEFNSNSIST VLPSVSTSIL PTQLGLKPPI SLPSDNLQPD 300 SFNLNGVQYW ETGTSSTNSS SISSGSSSIE LHNNNNSSFW FEGEPEDIKW SEYLHNPFLM 360 AASTQNQQTP QPIYNEIKSE TQFINDGSST NWHQNQQQQQ LQASDIYAKD FQRLAAALGQ 420 I

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKPLS EVENGDEKAP TTATTNNNNN NNNSNTTNQK ASGGSNELKF LKVDNSKPGG  180
LGVPEQKSGF SIEGSLGSKI NNNSISVTPT KDFFLDRPSD TMGYFPLHQL NYGSNAGLSV  240
NNPNPSLWFN QETTRPFEMN SEFNSNSIST VLPSVSTSIL PTQLGLKPPI SLPSDNLQPD  300
SFNLNGVQYW ETGTSSTNSS SISSGSSSIE LHNNNNSSFW FEGEPEDIKW SEYLHNPFLM  360
AASTQNQQTP QPIYNEIKSE TQFINDGSST NWHQNQQQQQ LQASDIYAKD FQRLAAALGQ  420
I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-107	MYB family protein