PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OVA17378.1
Organism
Macleaya cordata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
Family ARF
Protein Properties Length: 841aa    MW: 93529 Da    PI: 6.3119
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OVA17378.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.2e-23167268199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++ +++a+e+      g +++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+
  OVA17378.1 167 FCKTLTASDTSTHGGFSVLRRHADEClppldmGRQPP-TQELIAKDLHGIEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 262
                 99*****************************755544.469************************************************..449999** PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 v+v+r+
  OVA17378.1 263 VGVRRA 268
                 ***996 PP
2Auxin_resp116.22.9e-38293375183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+st+++F+v+Y+Pr+s+ eF+v+++++++++k++ s+GmRfkm+fe+e+++e+r++Gt++g+ d++p rW++SkWr+Lk
  OVA17378.1 293 AWHAVSTGTMFTVYYKPRTSPEEFIVPYDQYMESVKNSHSIGMRFKMRFEGEEAPEQRFTGTIIGIGDANPNRWNGSKWRCLK 375
                 89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    
MASSEVSSKG NCYNGLGESF SSGCTETNDG GVSRNGVAEA PRSYSTFPAV GKGKSDTEDA  60
LYSELWHACA GPLVTVPREG ERVFYFPQGH IEQVEASTNQ VGDQQMPVYD LQWKILCRVI  120
NVELKAEPDT DEVFAQVTLL PEMNQDENSV EKEPVPPLRP RPLVHSFCKT LTASDTSTHG  180
GFSVLRRHAD ECLPPLDMGR QPPTQELIAK DLHGIEWRFR HIFRGQPRRH LLQSGWSVFV  240
SSKRLVAGDA FIFLRGENGE LRVGVRRAMR QQSNVPSSVI SSHSMHLGVL ATAWHAVSTG  300
TMFTVYYKPR TSPEEFIVPY DQYMESVKNS HSIGMRFKMR FEGEEAPEQR FTGTIIGIGD  360
ANPNRWNGSK WRCLKVRWDE NSSVPRPERV SPWKVEPALT PPAPNPLPVP RPKRPRANMV  420
PSSPDSSVLT REGSSKVTLD PSPVSGLSRV LPGHDISTLN GTFAENQEPD TAQKPLLWCS  480
LPDDEKTGFC AANETPNGFC PLVDPNLDDN NPSKRHCQDK ERKFNLLSGP RPMSSSLDML  540
DSGLKNSAQV GNVESQKSGT IRYGGLSWYP EMQSPRVEQQ PGNWFMSLLP QSHQEDLPHP  600
KGITPKPPLS EQFEAVKAKG DGDCKLFGIS LFSNPVASEP TKSHTNKMYE PGGQIHPPLH  660
HSQALEPDQQ SEQTKGSKSV DAVAAGNEHE KLSRTCQQQS RNVQSNHQGG TTRSCTKVHM  720
QGIALGRSVD LTKFNGYDEL IAELDQMFEF NGGLMAPNKN WLVVYTDNEG DMMLAGDDPW  780
LEFCSMVRKI SIYTRDEVQR MNPRTLNQRI EEETLMVEEE RVSAKETKDL AHSSAANPEK  840
C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein