PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA18496.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

SRS

Protein Properties

Length: 522aa MW: 53893.2 Da PI: 8.5724

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA18496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	195.9	1.3e-60	290	458	5	152
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel.kskkqsalsstklssa 94 +++CqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWv+aa+rr+rq a +++ + + +++a k++r ++++++++s+t+ s++ OVA18496.1 290 AKTCQDCGNQAKKDCSHSRCRTCCKSRGYDCSTHVKSTWVSAARRRDRQLISAPNTATGEGDGggggassgSTSAVKKPRLItSQTQTTTASHTSNSNT 388 679*******************************************988887776665555788988887888888888734455566678888999 PP DUF702 95 eskkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 +++++++t+s lP++v+++a f+cvrv+ + dge+e+aYq+ v+igGhvfkG+Ly++G+ OVA18496.1 389 TPPRSFDTTSsyhhqdasfreaLPRQVRAPASFKCVRVTPIGDGEDEFAYQAIVKIGGHVFKGFLYNKGV 458 99999999*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MRDITTLVRN PKAAHRLTFS SKSIGSSLTS LLNGTMVDHY QSMIQEFGFA PVNDTGIRIC 60 TRWLSSDSGA FADWVASSSS IGLADDLSLG FNAGTAGPVG GGGGGGTQST PPTSITGGVG 120 GGGPNNGGGG GGGGGWSSTI RPINYALPVP HEMGMVGLRS DVLFVAPAST FHHNSHHHDP 180 FISDHHHNHN HNHHHHLSIN NNSGNNSSAT ALGIGVIPLL TASPCGTSQL WQNQQTHNNI 240 NYPKKSILIH HENPANPINL SNNSAGLGVN VGFGIGGTTT TATTTISASA KTCQDCGNQA 300 KKDCSHSRCR TCCKSRGYDC STHVKSTWVS AARRRDRQLI SAPNTATGEG DGGGGGASSG 360 STSAVKKPRL ITSQTQTTTA SHTSNSNTTP PRSFDTTSSY HHQDASFREA LPRQVRAPAS 420 FKCVRVTPIG DGEDEFAYQA IVKIGGHVFK GFLYNKGVVN GNEGMPNISE LHLGGGSSSG 480 GGGGGKTWPS SSALIIDPSD VYAATGSGLF GSGGTNFGNT IN

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MRDITTLVRN PKAAHRLTFS SKSIGSSLTS LLNGTMVDHY QSMIQEFGFA PVNDTGIRIC  60
TRWLSSDSGA FADWVASSSS IGLADDLSLG FNAGTAGPVG GGGGGGTQST PPTSITGGVG  120
GGGPNNGGGG GGGGGWSSTI RPINYALPVP HEMGMVGLRS DVLFVAPAST FHHNSHHHDP  180
FISDHHHNHN HNHHHHLSIN NNSGNNSSAT ALGIGVIPLL TASPCGTSQL WQNQQTHNNI  240
NYPKKSILIH HENPANPINL SNNSAGLGVN VGFGIGGTTT TATTTISASA KTCQDCGNQA  300
KKDCSHSRCR TCCKSRGYDC STHVKSTWVS AARRRDRQLI SAPNTATGEG DGGGGGASSG  360
STSAVKKPRL ITSQTQTTTA SHTSNSNTTP PRSFDTTSSY HHQDASFREA LPRQVRAPAS  420
FKCVRVTPIG DGEDEFAYQA IVKIGGHVFK GFLYNKGVVN GNEGMPNISE LHLGGGSSSG  480
GGGGGKTWPS SSALIIDPSD VYAATGSGLF GSGGTNFGNT IN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	2e-65	SRS family protein