PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA19081.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 457aa MW: 49838.2 Da PI: 8.5053

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA19081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.8	4.3e-09	51	76	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++ rtG C++G +C+F+H+p OVA19081.1 51 GEQDCTYYIRTGLCRFGMTCRFNHPP 76 6789********************97 PP
2	zf-CCCH	38.8	1.6e-12	97	121	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OVA19081.1 97 QPECQYYLKTGTCKFGATCKFHHPR 121 799********************96 PP
3	zf-CCCH	36.1	1.1e-11	143	167	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ OVA19081.1 143 EKECAYYLRTGQCKFGNTCKFHHPQ 167 679********************97 PP
4	zf-CCCH	38.4	2e-12	304	329	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ OVA19081.1 304 DQPECQFYMKTGDCKFGAVCRFHHPR 329 689*********************96 PP
5	zf-CCCH	40	6.4e-13	349	375	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ OVA19081.1 349 PGEPLCIFYSRYGICKFGPNCKFDHPM 375 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MDYDTGIQMS RGTVVTEGSS LSPPLDDDTM WQLNLRSNET MESGPYPERP GEQDCTYYIR 60 TGLCRFGMTC RFNHPPNRKL AIAAARIKGG YPERIGQPEC QYYLKTGTCK FGATCKFHHP 120 RDKAGIAGRV LLNILGYPLR PNEKECAYYL RTGQCKFGNT CKFHHPQPSN TMVSLRGSPV 180 YPPVQSPTTP GQQSYPGGIT NWVSRASFIP SPRWQGPSSY APLILPQGVV PVPGWNAYAG 240 QLGSGSSSES QQQTSGNSHF YGTTRPSDTT SAGVQGTFSP YRSGSAPTGI YALQRENVFP 300 ERPDQPECQF YMKTGDCKFG AVCRFHHPRE RLIPVPNCLL SPLGLPLRPG EPLCIFYSRY 360 GICKFGPNCK FDHPMGTFTY GLSASSSVDV PIVRRLLGSS SGPAALQLSS EGSVEAGSGK 420 PRRLSLSETR QMPSADEDID VEGPQTTSSI GPVASFP

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MDYDTGIQMS RGTVVTEGSS LSPPLDDDTM WQLNLRSNET MESGPYPERP GEQDCTYYIR  60
TGLCRFGMTC RFNHPPNRKL AIAAARIKGG YPERIGQPEC QYYLKTGTCK FGATCKFHHP  120
RDKAGIAGRV LLNILGYPLR PNEKECAYYL RTGQCKFGNT CKFHHPQPSN TMVSLRGSPV  180
YPPVQSPTTP GQQSYPGGIT NWVSRASFIP SPRWQGPSSY APLILPQGVV PVPGWNAYAG  240
QLGSGSSSES QQQTSGNSHF YGTTRPSDTT SAGVQGTFSP YRSGSAPTGI YALQRENVFP  300
ERPDQPECQF YMKTGDCKFG AVCRFHHPRE RLIPVPNCLL SPLGLPLRPG EPLCIFYSRY  360
GICKFGPNCK FDHPMGTFTY GLSASSSVDV PIVRRLLGSS SGPAALQLSS EGSVEAGSGK  420
PRRLSLSETR QMPSADEDID VEGPQTTSSI GPVASFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-161	C3H family protein