PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OVA20325.1
Organism
Macleaya cordata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14254.2 Da    PI: 10.7741
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OVA20325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.51.1e-10851245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                +ie+ + r+  fskRr   +KKAe LS LCd+    + fs+tg+
  OVA20325.1  8 KIESLIARKACFSKRRRVTIKKAEMLSKLCDVGTIFLAFSPTGR 51
                79****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MRRRKLEKIE SLIARKACFS KRRRVTIKKA EMLSKLCDVG TIFLAFSPTG RPFLHSTIPS  60
SSAVDSIINK FINDIQQALT AQTPSSHSSS SSSNPQSQSS GIEINHDHGR HSSVDDQSLL  120
QKGKQVSMD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRRKLEKIESLIARKACFSKRRR
2325RRRKLEKIESLIARKACFSKRRR
32125KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.14e-10M-type_MADS family protein