PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM62628.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 188aa MW: 21498.5 Da PI: 10.3057

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM62628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.8e-17	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g+W++ ++ g++R++k+c++rw +yl OWM62628.1 18 KGAWSKQEDQKLIDYIQKHGEGCWRSLPHAAGLRRCGKSCRLRWVNYL 65 79********************************************97 PP
2	Myb_DNA-binding	54.4	2.9e-17	71	116	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l OWM62628.1 71 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 116 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence
MRKLCSDKPK KLGVAVNKGA WSKQEDQKLI DYIQKHGEGC WRSLPHAAGL RRCGKSCRLR 60 WVNYLRPDLK RGNFGEDEED LIIKLHALLG NRWSLIAGRL PGRTDNEVKN YWNTHLRKKL 120 VKMGIDPNNH RPRPVKGFAQ TSDEDNSSVS QLRSEQEPRE TSSTKNTSSF VPDLNLDLTI 180 GPPLMDNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	1e-71	MYB family protein