PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM62653.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

NF-X1

Protein Properties

Length: 1117aa MW: 120661 Da PI: 8.0857

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM62653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	22.2	2.9e-07	317	335	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++ CH GpC+pC+ OWM62653.1 317 CGRHQCERSCHVGPCDPCQ 335 ******************6 PP
2	zf-NF-X1	16.1	2.5e-05	434	459	1	20
zf-NF-X1 1 CG......kHkCqklCHeGpCppCpq 20 CG +H+C+ +CH G+C+pCp+ OWM62653.1 434 CGkllpckIHSCKDKCHAGDCGPCPA 459 78888888****************95 PP
3	zf-NF-X1	16.6	1.7e-05	537	555	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+ lCH G CppC OWM62653.1 537 CGQHSCETLCHSGHCPPCL 555 ******************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1117 aa Download sequence
MSFHVRNERR AGLRFQAPNA RQEWVPRGSA NAPPPAATPV NPPSSFNLNS NGNGGDSNNS 60 TAAPDSRVRN GRRFASSHGC NGLSDHVPVP RANHGPRGHS SRPMSQRRGK EKEKDRSGDP 120 LDESKFFKDP NLPQLVQEIQ EKLTRGAVEC MICYEMVRRT ATIWSCSSCY SIFHLNCIKK 180 WARAPTSVDL SAEKSSGNNW RCPGCQRVQL TSSKEIQYLC FCGKRTDPPS DLYLTPHSCG 240 EPCGKPLERN VLSTGESAED LCPHVCVLQC HPGPCPPCKQ FAPPRVCPCG KETITTRCSD 300 RKPVLTCGQR CDKLLDCGRH QCERSCHVGP CDPCQVLFNA SCFCKKKVEV VLCGDMAVKG 360 EVDMESGVFS CTSSCGKKLS CGNHDCLEVC HPGPCGDCAL TPGKVRTCYC GNTNLQMEER 420 KSCLDPIPTC SEVCGKLLPC KIHSCKDKCH AGDCGPCPAT VTQKCRCGLT SRTVKCYQTV 480 EESFTCDKPC GRKKNCGRHR CSERCCPLSN SSSSSSRTGG EWDPHFCSMP CGKKLRCGQH 540 SCETLCHSGH CPPCLETIFT DLTCACGRTS IPPPLPCGTP PPSCQLPCSA PQPCGHSSSH 600 SCHFGECPPC SVPVAKECVG GHVILRNIPC GSKDIRCNKL CGKTRQCGLH ACGRTCHPPP 660 CDMNMPEDPN QKGSCGQICG APRRDCRHTC KAPCHPLAPC PDNRCDFSAT ITCSCGRLSA 720 TVPCDAGGLS GNFATDNVFE ASIIQKLPAP LQPVESTAGG KKVPLGQRKL MCDEECSKLE 780 RKRLLADAFD IATPNLEALH FGESSTISES VMDLFRRDPK WVMAVEERCK FLVLGKGRTG 840 SNGLKVHVFC PMLKEKRDAV RLIAGRWKLA VNSAGWEPKR FVVVHVTSKS KPPSRVLGVK 900 TVNSPHPPVF DPLVDMDPRL VVSFFDLPRE SDITGLVLRF GGECELVWLN DKNALAVFGD 960 PARAATALRR LDHGSVYYGV AVVVVQNGPP SALGANVWGG AAVSASSKGN PWKKAVIQEA 1020 GWKEEDDWST RNSSSDLQAT VLSGKEPPIS ASVNRWSVLD SETGNRTSAS SVPSSSLRIG 1080 DSSKPAGGTS HSSSVSEAAN PGMESSEVVD DWEKAYD

Sequence ? help Back to Top

Protein Sequence Length: 1117 aa Download sequence

MSFHVRNERR AGLRFQAPNA RQEWVPRGSA NAPPPAATPV NPPSSFNLNS NGNGGDSNNS  60
TAAPDSRVRN GRRFASSHGC NGLSDHVPVP RANHGPRGHS SRPMSQRRGK EKEKDRSGDP  120
LDESKFFKDP NLPQLVQEIQ EKLTRGAVEC MICYEMVRRT ATIWSCSSCY SIFHLNCIKK  180
WARAPTSVDL SAEKSSGNNW RCPGCQRVQL TSSKEIQYLC FCGKRTDPPS DLYLTPHSCG  240
EPCGKPLERN VLSTGESAED LCPHVCVLQC HPGPCPPCKQ FAPPRVCPCG KETITTRCSD  300
RKPVLTCGQR CDKLLDCGRH QCERSCHVGP CDPCQVLFNA SCFCKKKVEV VLCGDMAVKG  360
EVDMESGVFS CTSSCGKKLS CGNHDCLEVC HPGPCGDCAL TPGKVRTCYC GNTNLQMEER  420
KSCLDPIPTC SEVCGKLLPC KIHSCKDKCH AGDCGPCPAT VTQKCRCGLT SRTVKCYQTV  480
EESFTCDKPC GRKKNCGRHR CSERCCPLSN SSSSSSRTGG EWDPHFCSMP CGKKLRCGQH  540
SCETLCHSGH CPPCLETIFT DLTCACGRTS IPPPLPCGTP PPSCQLPCSA PQPCGHSSSH  600
SCHFGECPPC SVPVAKECVG GHVILRNIPC GSKDIRCNKL CGKTRQCGLH ACGRTCHPPP  660
CDMNMPEDPN QKGSCGQICG APRRDCRHTC KAPCHPLAPC PDNRCDFSAT ITCSCGRLSA  720
TVPCDAGGLS GNFATDNVFE ASIIQKLPAP LQPVESTAGG KKVPLGQRKL MCDEECSKLE  780
RKRLLADAFD IATPNLEALH FGESSTISES VMDLFRRDPK WVMAVEERCK FLVLGKGRTG  840
SNGLKVHVFC PMLKEKRDAV RLIAGRWKLA VNSAGWEPKR FVVVHVTSKS KPPSRVLGVK  900
TVNSPHPPVF DPLVDMDPRL VVSFFDLPRE SDITGLVLRF GGECELVWLN DKNALAVFGD  960
PARAATALRR LDHGSVYYGV AVVVVQNGPP SALGANVWGG AAVSASSKGN PWKKAVIQEA  1020
GWKEEDDWST RNSSSDLQAT VLSGKEPPIS ASVNRWSVLD SETGNRTSAS SVPSSSLRIG  1080
DSSKPAGGTS HSSSVSEAAN PGMESSEVVD DWEKAYD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein