PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM62685.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 760aa    MW: 83488.9 Da    PI: 6.4286
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM62685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651e-2068123156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q+++Le++F+++++p++++r+ L++ lgL  rq+k+WFqNrR+++k
  OWM62685.1  68 KKRYHRHTTHQIQTLEAMFKECPHPDEKQRQLLSRDLGLAPRQIKFWFQNRRTQMK 123
                 688999***********************************************998 PP
2START156.42.3e-492724944206
                 HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
       START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                  +a++el+++++ +ep+W+ks+    + ++ + + q f+++++       + ea+r+s vv m++  lv  ++d   +W e ++     a+t+eviss 
  OWM62685.1 272 ASAMEELLRLIETNEPLWMKSPsdgkDVLDTESYSQMFPRANSqlknpnIRPEASRDSQVVMMNALALVDMFMDPD-KWMELFPtivsIAKTIEVISSP 369
                 579*******************666666666666666666655***999999**************9999999999.9**999999999*********9 PP

                 ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.H CS
       START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.h 178
                       g lqlm+ elq+lsp+ p R++ ++Ry++q ++g w+i+dvS d  ++ +  s+s+ R  +lpSg+li++++ng+skvtwvehv+++++lp h
  OWM62685.1 370 mltshnGSLQLMYEELQLLSPVLPaREYFILRYCQQIKQGLWAIADVSYDISRHDQFaSPSGSR--RLPSGCLIHDLPNGYSKVTWVEHVEVEEKLPaH 466
                 9*************************************************99999878888888..********************************* PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                   +r l+ sgla+ga +w+atl+r ce+
  OWM62685.1 467 RFYRDLIYSGLAFGAERWLATLERMCER 494
                 **************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    
MVESRVRVGG YSVFLLQRGC LVGAEWREEG GRVGMEYSGG AGGSSGDHHH DGDGGGGGSS  60
SSDPLRRKKR YHRHTTHQIQ TLEAMFKECP HPDEKQRQLL SRDLGLAPRQ IKFWFQNRRT  120
QMKAQHERAD NCALRSENDR IRCENIAIRE ALKTVICPSC GTQPTAEDSY FDEQKMRMEN  180
AQLKEELDRV SSVAAKYIGR PISQLPPVPP MHISSLDLSM GSFGAQEMVG GPSLDLDLDL  240
HPGSSSAGLP GFPFQPMVFS DMDKSLMAEI GASAMEELLR LIETNEPLWM KSPSDGKDVL  300
DTESYSQMFP RANSQLKNPN IRPEASRDSQ VVMMNALALV DMFMDPDKWM ELFPTIVSIA  360
KTIEVISSPM LTSHNGSLQL MYEELQLLSP VLPAREYFIL RYCQQIKQGL WAIADVSYDI  420
SRHDQFASPS GSRRLPSGCL IHDLPNGYSK VTWVEHVEVE EKLPAHRFYR DLIYSGLAFG  480
AERWLATLER MCERIACLMG MGSATRDLGV IPPPEGKRSM MKLAHRMVSN FCASIGASSS  540
RQQKWTTLSS ADEMGVRIAL HRNTDVGQPN GVVLRAATTI WLPISPQSIF NFFKDERTRP  600
QWDVLSNGNA VQEVAHIANG SHPGNCISVL RAFNTSQNNM LILQESCVDS SGCLVVYCPV  660
DLPAINLAMS GEDTSYIPLL PSGFAISPDG RTGPSGEGTS SSSSSSRASS GGGSLVTVAF  720
QILVSSLPTS KLSLESVDTV NHLISTTVQQ IKAALNCPAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein