PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM62687.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB_related
Protein Properties Length: 425aa    MW: 47271.4 Da    PI: 7.0139
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM62687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-17111155147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a k++G g W++I +++g ++t+ q++s+ qk+
       OWM62687.1 111 REKWTEEEHQKFLEALKLYGRG-WRKIEEHVG-TKTAVQIRSHAQKF 155
                      789*******************.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MHKDWILAVL LIEYKDYSAF EAFRVDGYLS DVIMGGSVVS QQSFFRHFAA MVVEDQGEGT  60
VSDTSHTVLV SGLSDSSKDE YSNRVNRLQE TSLFNDHSPK IRKPYTMMKQ REKWTEEEHQ  120
KFLEALKLYG RGWRKIEEHV GTKTAVQIRS HAQKFFSKVA RESNDGTNGS VDSVEIPPPR  180
PKRKPVHPYP RKSVNSPREA PISYRTELVA AKENLSPRSV LSVGGSESDT SGPLASDDHS  240
GCPTPNSCST YEKENGYPDK ANTSSDSSPL SSFKLFGRTV VVTDITPKSS SPSDKENSSD  300
LPDQKVGETR APNQWNAQFL SSLVLEVPPS CSLQWSSYQG LPVVFFTPFN PSSLSDQDVK  360
ERSCTISDSE SVTEAENKSS ADINLSPRDS GKREAGRGFV PYKRRQSSVN LGDQRQLSQK  420
PRVDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.23e-41MYB_related family protein