PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM62836.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 326aa MW: 37518.7 Da PI: 4.6705

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM62836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.7e-18	27	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++v G g+W+++ar g++Rt+k+c++rw++yl OWM62836.1 27 KGPWTAEEDALLMNYVSINGEGRWNSVARFAGLKRTGKSCRLRWLNYL 74 79********************************************97 PP
2	Myb_DNA-binding	46.5	8.6e-15	80	123	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ ++G++ W++I+++++ gRt++++k++w++ OWM62836.1 80 RGSITLQEQLLILELHSRWGNR-WSKISQYLP-GRTDNEIKNYWRT 123 78889***************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MEVRVARCFS PETSDVNENE FIMDVKKGPW TAEEDALLMN YVSINGEGRW NSVARFAGLK 60 RTGKSCRLRW LNYLRPDLRR GSITLQEQLL ILELHSRWGN RWSKISQYLP GRTDNEIKNY 120 WRTRVQKQAK QLKCEVNSKQ FRDAMEHVWM PRLRERIQSL SGNSASSAQP TDAATYPVDP 180 TSNHTRDQNI VYQMDQTAGW SNTFNSSFIT EILAASSDSY LDNTQASLVS YSSDHYGPWE 240 GSCMDKSFIT EIPAASSDSY VDNTQVSLVS DSSDHYCPWE GSCMDNIFDV SFSWPENLCD 300 SPGDLMMENM WNEENIRLLQ QQLFED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06490.1	2e-73	MYB family protein