PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM62861.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 225aa    MW: 25817.5 Da    PI: 10.3809
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM62861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.41.4e-16951244
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                +i  +s r vtfskR++g+lKK + LS+LC++ ++ i+++++ 
  OWM62861.1  9 FITRDSSRRVTFSKRKKGLLKKVSQLSILCGVPACAIVYGQKE 51
                6888999*********************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MRKKVKLAFI TRDSSRRVTF SKRKKGLLKK VSQLSILCGV PACAIVYGQK ESQLELWPPS  60
PISVRRVISK FQEMPAMEQS KKMMNQESFL LERVARTEEQ LKKLRKDNRE RKMANMMYRG  120
LDVMLVPGWL EGLILLDLKD LNSVINKTLN QIDQKQEMLG RAGTSKEVVE PEEKAEAPVE  180
ANTLVESMLR EQCFKDLVKL LELAPLPLEK GRTPSSTMWS NPFLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-33M-type_MADS family protein