PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM62867.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21156.4 Da    PI: 7.4423
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM62867.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.2e-17950243
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                +ie +s r+ tf kR++g+lKKA+ELS LC++ ++ ii++++
  OWM62867.1  9 FIEHNSSRKATFNKRKKGLLKKASELSNLCGVPACAIIYGEH 50
                89**************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MRRKVKLAFI EHNSSRKATF NKRKKGLLKK ASELSNLCGV PACAIIYGEH ESETELWPPS  60
PISVRRVISK FHDMSEAEQS KKMMNQENFL LQRITKTEEQ LKKLRKDNKE MEMLNVMYQG  120
LGGLQPPEWL QGMNMLDLNN LEWVIDQMLD KICERQEKVS KTEVGGSNEV MEEAEKAGPE  180
DAST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-42M-type_MADS family protein