PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM63195.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C2H2
Protein Properties Length: 233aa    MW: 25451.2 Da    PI: 9.995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM63195.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00017294123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H+++H
  OWM63195.1 72 YSCGFCKREFRSAQALGGHMNVH 94
                99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MEKNSLSKSL KDHCIGNNGT TINSDNITNR HSHYQNILKS DPRSHNTQKG VGTDHLDSSV  60
GAGLASWPPR SYSCGFCKRE FRSAQALGGH MNVHRRDRAR LRQRSPPPSM DDYPILSLNP  120
NASHSPSPNF GPPRFPSSLL SPSSPFVPHH SHSSSSSPSS IVNVKLAGFK WSHSSSLRDG  180
LSSKEAFRTQ SATSHCARGE GSRHDPLSLE ISNLFGETLK AVDVDLELRL GYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.16e-22C2H2 family protein